Conférences  >  Sciences biologiques  >  Génomique et bio-informatique  >  Allemagne

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1
SPA24-01 — EMBL Course Gene expression at spatial resolution
04 mar 2024 - 08 mar 2024 • Heidelberg, Allemagne
Organisateur:
EMBL Heidelberg
Résumé:
This interactive course will introduce participants to a new generation of a spatially resolved transcriptomics assay provided by 10x Genomics. Objectives The Visium Cytassist Spatial Gene Expression Solution uses probes targeting the whole transcriptome for intact tissue sections in morphological context, offering a previously inaccessible view of tissue biology. These two complementary methods to study tissue come together on Visium Cytassist Spatial Gene Expression slides. Through practical work in the lab and theoretical sessions, the participants will learn the entire workflow of sample preparation of fresh-frozen tissue samples, fixation and sequencing library preparation. Utilising the 10x Genomics Loupe Browser pipeline, the participants will also have hands-on training in spatial transcriptomics data analysis.
Contact:
Email.: sophie.dutzi@embl.de
Identifiant de l'évènement:
1601167
2
RNA-Seq Data Analysis Workshop
11 mar 2024 - 14 mar 2024 • Berlin, Allemagne
Organisateur:
ecSeq Bioinformatics GmbH
Résumé:
Advance your research. Understand RNA-Seq analyses challenges and solve them yourself.

In a nutshell

- Learn the essential computing skills for NGS bioinformatics

- Understand NGS analysis algorithms (e.g. read alignment) and data formats

- Use bioinformatics tools for handling RNA-Seq data

- Create diagnostic graphics and statistics

- Compare different approaches for differential expression analysis

The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. You will be trained on understanding NGS data formats and handling potential problems/errors therein. In the course we will use a real-life RNA-seq dataset from the current market leader illumina.

All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic.

Contact:
Events Team;     Email.: events@ecseq.com
Sujets:
NGS, Next Generation Sequencing, RNA Seq, DNA, sequencing technologies, Bioinformatics, Workshop
Identifiant de l'évènement:
1584973
3
EMBL Course — scATAC-seq: attacking open chromatin in single cells
08 avr 2024 - 12 avr 2024 • Heidelberg, Allemagne
Organisateur:
EMBL Heidelberg
Résumé:
ATAC-Seq stands for Assay of Transposase Accessible Chromatin and is a widespread method to profile open chromatin on a genome-scale. The goal of this introductory course is to teach the entire workflow of a single cell ATAC-Seq experiment including library preparation, sequencing, data processing, and downstream analysis by addressing a real biological question that will be answered at the end of the course.
Contact:
Email.: inna.boesselmann@embl.de
Sujets:
Data Analysis and Bioinformatics, Genome Biology, Transcription and Translation, Technology, Imaging and Methods
Identifiant de l'évènement:
1599916
Sujets apparentés:
4
GEE24-01 — EMBL Course: Genome engineering: CRISPR/Cas in cells and mice
01 sep 2024 - 06 sep 2024 • Heidelberg, Allemagne
Organisateur:
EMBL Heidelberg
Résumé:
This course will provide training in genome editing and cell engineering in mammalian cells and mouse embryos using the highly efficient CRISPR/Cas9 system. Participants will learn design of CRISPR targets using bioinformatics tools, generation of gene knock-outs/knock-ins, and target validation using the most current technologies. The course will be split into two groups (mammalian cells OR mice) based on participants’ expertise. Please note that all participants are expected to engage in all sessions. Participants should plan for approximately 1 hour extra per day for self paced learning modules.
Contact:
Email.: charlotte.courtney@embl.de
Identifiant de l'évènement:
1601641
5
EES24-11 — EMBO | EMBL Symposium The complex life of RNA
15 oct 2024 - 18 oct 2024 • Heidelberg, Allemagne
Organisateur:
EMBL Heidelberg
Résumé:
Before the genetic information stored in DNA can be used to direct cell growth and metabolism, it has to be transferred into RNA. Messenger RNAs (mRNAs) that code for proteins and noncoding RNAs are key components in the transmission of genetic information in all life forms – from viruses to complex mammalian organisms. Following the great success of the 2022 edition of this long-standing symposium, we are looking forward to returning in 2024, bringing together leaders in the RNA field, post-docs and students, with the aim of disseminating and discussing the most recent results. The programme will include topics on transcription, RNA processing and modification, mRNA export and localisation, mRNA surveillance and decay, translation, the activity of non-coding RNAs, the control of mRNA expression, and coupling among these processes.
Contact:
Email.: iva.gavran@embl.de
Identifiant de l'évènement:
1601135
6
Dagstuhl-Seminar — Deep Learning for RNA Regulation and Multidimensional Transcriptomics
01 dec 2024 - 06 dec 2024 • Schloss Dagstuhl, Wadern, Allemagne
Organisateur:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik
Résumé:
At the Dagstuhl Seminar on RNA Regulation and Multidimensional Transcriptomics, we will delve into the intersection of computational biology, deep learning, and RNA research. The event will explore how cutting-edge AI technologies are reshaping our understanding of RNA-based gene regulation and its role in health and disease.
Identifiant de l'évènement:
1589360
7
Dagstuhl-Seminar — Coding Theory and Algorithms for Emerging Technologies in Synthetic Biology
15 dec 2024 - 20 dec 2024 • Schloss Dagstuhl, Wadern, Allemagne
Organisateur:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik
Résumé:
The progress in understanding genes and genomes has given a boost to the use of synthetic DNA for biological and technological applications. Synthetic nucleic acids play a central role in synthetic biology and in emerging therapeutic paradigms, e.g., genome editing and nucleic acid vaccines. DNA-based data storage is making significant progress, and thanks to its extreme data-density, its high durability and its timelessness, it is promising to be the next standard for data archival systems. Synthetic biology and the use of synthetic DNA for information storage applications bring important algorithmic and data analysis challenges. In synthetic biology, reagent and assay design are often driven by algorithmic approaches. Novel synthesis technologies offer cost-reduction by several orders of magnitude at the cost of increased error-rate, raising new coding-theoretic questions. This Dagstuhl Seminar aims to bring together leading biologists, chemists, engineers, computer/data scientists, and theoreticians working on synthetic biology and on DNA-based data storage, to enable joint work in small groups leading to discussing and exploring recent advancements and current challenges.
Identifiant de l'évènement:
1589350
Sujets apparentés:


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Dernière mise à jour: 21 janvier 2024